Summary of what happened:
Hello, I am planning to use MRIQC for thousands of subjects, each of these subjects have four MRI images to be QC-ed.
However, the result I get from the command below is usually around 300 MB, which is unfeasible to keep if we are talking about thousands of subjects.
My question is: could the output be abbreviated and cut down more?
If not, which are the resultant files that I should be keeping? Since the dataset is very big, I cannot keep figures; just the important stats that can be vital for further analyses (in my case, analyses using Freesurfer and Cat12) and/or identifying potential images to be discarded.
Typically, the command I use is:
mriqc rawdata_tmp derivatives_tmp participant --participant-label 100000 -m T1w --no-sub --reports-only -f
Version:
MRIQC (v23.1.0)
Environment (Docker, Singularity / Apptainer, custom installation):
MRIQC is available as a module provided by my system’s administrator.
Data formatted according to a validatable standard? Please provide the output of the validator:
Already validated to be correct by BIDS Validator v1.14.6.