How to run MRIQC on cluster

1

Hi,

I’m trying to run MRIQC on a dataset on cluster. For each subject, I created a job and run mriqc by providing --participant_label. I specified mem=16000. However, most of the jobs got cancelld as the memory exceeded 16000. Then, I ran mriqc on the whole dataset without providing --participant_label ( mem=32000) and again the job got cancelled. I would appreciate any input on how to run mriqc on a cluster.

thanks

2

What kind of scheduler you are using? How many subjects? What are the characteristics of your compute nodes (memory, cpus, etc)?