I’ve been trying the different reconstruction options in qsirecon.
qsirecon_dipy_3dshore
qsirecon_dsi_studio_gqi
qsirecon_mapmri
qsirecon_mrtrix_multishell_msmt_ACT-hsvs
qsirecon_pyafq_tractometry
They all seem to run and produce output, but I’m having trouble viewing the fib.gz tract files. I’ve tried both dipy_horizon and surfice. Both fail. I tried unzipping a fib.gz file, and encounter an error that suggests the file is corrupted:
End-of-central-directory signature not found. Either this file is not
a zipfile, or it constitutes one disk of a multi-part archive. In the
latter case the central directory and zipfile comment will be found on
the last disk(s) of this archive.
unzip: cannot find zipfile directory in one of sub-CAM003_ses-01brain_dir-AP_space-T1w_desc-preproc_3dSHORE.fib.gz
I re-downloaded the file and also tried unzipping them right where they were created (in case moving them created the issue). In every case, these files appear to be corrupted and unreadable.
Have you encountered this issue before? Do you have any suggestions?
Thank you,
Dianne