Right now, we are working through issues with installing packages and have specific questions about how to search the neural data for particular anatomical regions that’s are not currently defined. There seems to be an issue with importing the trial viewer as it gives the error: "cannot import name ‘colorMap’ from ‘vedo.colors’. Furthermore, we are looking to investigate the S1DZ region in the somatosensory cortex, but the IBL dataset does not have a label for this region; is there an ideal way of going about finding the region? Thank you so much!
Hello,
The best way to visualize the trials for each recordings is through the web application here: https://viz.internationalbrainlab.org/. There is a brain region search available on this website.
As for the brain regions, we use the Allen Institute common coordinate framework: https://atlas.brain-map.org/. Is S1DZ part of the anatomical labels of the Allen CCF ? If not, you may have to find the nearest brain region in the Allen framework to perform the query.