ICA-AROMA errors

HI there

We recorded new fmri data using multiband sequences and I experienced some errors with ICA-AROMA processes I can’t elucidate.
Interestingly, we acquired 3 runs with same parameters, run3 seems to work (it generates desc-smoothAROMAnonaggr files) while the first two runs display the following errors:

RUN1:
Node Name: fmriprep_wf.single_subject_02_wf.func_preproc_task_Vibration_run_1_wf.ica_aroma_wf.calc_median_val

File: /output/fmriprep/sub-02/log/20191028-154356_87130b35-6578-48b4-9cc3-f6b8a6aaeac9/crash-20191029-051455-root-calc_median_val-79f5ddb9-b5f6-434f-8f45-99a173b92939.txt
Working Directory: /tmp/work/fmriprep_wf/single_subject_02_wf/func_preproc_task_Vibration_run_1_wf/ica_aroma_wf/calc_median_val
Inputs:

  • args: ``
  • environ: {'FSLOUTPUTTYPE': 'NIFTI_GZ'}
  • in_file: ``
  • index_mask_file: ``
  • mask_file: ``
  • op_string: -k %s -p 50
  • output_type: NIFTI_GZ
  • split_4d: ``

Traceback (most recent call last): File “/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/multiproc.py”, line 69, in run_node result[‘result’] = node.run(updatehash=updatehash) File “/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py”, line 479, in run result = self._run_interface(execute=True) File “/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py”, line 569, in _run_interface return self._run_command(execute) File “/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py”, line 662, in _run_command result = self._interface.run(cwd=outdir) File “/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py”, line 382, in run runtime = self._run_interface(runtime) File “/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py”, line 767, in _run_interface self.raise_exception(runtime) File “/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py”, line 704, in raise_exception ).format(**runtime.dictcopy())) RuntimeError: Command: fslstats /tmp/work/fmriprep_wf/single_subject_02_wf/func_preproc_task_Vibration_run_1_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/merge/vol0000_xform-00000_merged.nii.gz -k /tmp/work/fmriprep_wf/single_subject_02_wf/func_preproc_task_Vibration_run_1_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/mask_std_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz -p 50 Standard output: Standard error: std::bad_alloc Return code: 255

RUN2:
Node Name: fmriprep_wf.single_subject_02_wf.func_preproc_task_Vibration_run_2_wf.ica_aroma_wf.calc_bold_mean

File: /output/fmriprep/sub-02/log/20191028-154356_87130b35-6578-48b4-9cc3-f6b8a6aaeac9/crash-20191029-044759-root-calc_bold_mean-e5c0dd8e-58d0-4516-853b-a8fba06a498d.txt
Working Directory: /tmp/work/fmriprep_wf/single_subject_02_wf/func_preproc_task_Vibration_run_2_wf/ica_aroma_wf/calc_bold_mean
Inputs:

  • args: ``
  • dimension: T
  • environ: {'FSLOUTPUTTYPE': 'NIFTI_GZ'}
  • in_file: ``
  • internal_datatype: ``
  • nan2zeros: ``
  • out_file: ``
  • output_datatype: ``
  • output_type: NIFTI_GZ

Traceback (most recent call last): File “/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/multiproc.py”, line 69, in run_node result[‘result’] = node.run(updatehash=updatehash) File “/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py”, line 479, in run result = self._run_interface(execute=True) File “/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py”, line 569, in _run_interface return self._run_command(execute) File “/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py”, line 662, in _run_command result = self._interface.run(cwd=outdir) File “/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py”, line 382, in run runtime = self._run_interface(runtime) File “/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py”, line 767, in _run_interface self.raise_exception(runtime) File “/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py”, line 704, in raise_exception ).format(**runtime.dictcopy())) RuntimeError: Command: fslmaths /tmp/work/fmriprep_wf/single_subject_02_wf/func_preproc_task_Vibration_run_2_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/merge/vol0000_xform-00000_merged.nii.gz -Tmean /tmp/work/fmriprep_wf/single_subject_02_wf/func_preproc_task_Vibration_run_2_wf/ica_aroma_wf/calc_bold_mean/vol0000_xform-00000_merged_mean.nii.gz Standard output: Standard error: Killed Return code: 137

thanks for help/any advise!
michael

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