I am implementing a FSL First Level Analysis into a nipype workflow with the aim of being reutilisable in future studies by just inputing the data. The base code for one specific subject can be found in my github:
Basically, this code that I share with you is an adaptation of the excellent notebook created by Chris Gorgolewski:
The results for the contrast maps are the same as those in Chris’ code, which indicates that the pipeline works well. However, in contrast to his case, when the FEAT node is run, no design matrix and design_cov are generated and this is a kind of information I would like to be able to retrieve. I’ve been struggling with this, but I can’t see where is the problem. What am I missing here? Any suggestion?
Thanks a lot in advance!