Hi jsein, I looked at the link you share here but it has been moved. I have a similar problem about qsiprep derivatives for T1w in the anat folder.
In the image shared, I cant seem to get the outputs related to “T1w_class-CSF_probtissue.nii.gz`” when i run qsiprep.
It also shows that freesurfer didnt run in the .html file. Can you help me clarify the problem?