Issue with dcm2bids

[Oumayma]

Summary of what happened:

Hi all
I used dcm2bids to arrange my data by following the steps on GitHub. However, I encountered an issue where all the images ended up in the same folder, without separation by patient or session(screen). Should I create the folders manually?
is there an automated process that can recognize sessions corresponding to dates?

thanks !

Command used (and if a helper script was used, a link to the helper script or the command generated):

(https://unfmontreal.github.io/Dcm2Bids/3.2.0/tutorial/first-steps/#scaffolding)

Screenshots / relevant information:

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[Steven]

Hi @Oumayma,

The command in your post is a link to documentation. Can you please report the command you used?

Also, the output you are showing looks like the results of dcm2bids_helper, which puts all of the dcm2niix outputs for a given subject in to the temporary helper folder. So that looks like expected. From those outputs you can use the JSON fields to determine your config file items.

Best,
Steven

[Oumayma]

Thank you very much for replying. I used these commands:

I’m starting to understand because I didn’t fully grasp all the steps before

[abore]

Hello @Oumayma ,

Do you need any help using dcm2bids ?

Best,
Arnaud

[Oumayma]

Hi @abore

thanks a lot for asking, actually i’m using ezBIDS