Issues with the results generated by dHCP structure pipeline

1

Hi experts,

I want to map the volumn dhcp fmri to surface fmri. But I found a lot of subjects’ pial native file with the different number of vertices comparing to others as Mapping dhcp volume fmri to surface showing.

So I downloaded the raw image file and used dHCP-structureal-pipeline to get the corresponding file to keep the process going on. But some issues occured to me. As the following command shows:

`

docker run --rm -t     -u $(id -u):$(id -g)     -v $PWD/data:/data     biomedia/dhcp-structural-pipeline:latest   CC00186AN14 60900 44 -T1 data/sub-CC00186AN14_ses-60900_rec-SVR_T1w.nii.gz -T2 data/sub-CC00186AN14_ses-60900_rec-SVR_T2w.nii.gz

There is the version of docker:

Docker version:
Client: Docker Engine - Community
Version: 24.0.7
API version: 1.43
Go version: go1.20.10
Git commit: afdd53b
Built: Thu Oct 26 09:07:41 2023
OS/Arch: linux/amd64
Context: default

But the program reported an error when running surface pipeline:

ERROR: In /usr/src/structural-pipeline/build/VTK/IO/Legacy/vtkDataReader.cxx, line 402
vtkGenericDataObjectReader (0x14959e0): Unable to open file: surfaces/CC00186AN14-60900/vtk/CC00186AN14-60900.L.sphere.native.surf.vtk

ERROR: In /usr/src/structural-pipeline/build/VTK/Common/ExecutionModel/vtkExecutive.cxx, line 784
vtkCompositeDataPipeline (0x14962f0): Algorithm vtkGenericDataObjectReader(0x14959e0) returned failure for request: vtkInformation (0x1497640)
Debug: Off
Modified Time: 40
Reference Count: 1
Registered Events: (none)
Request: REQUEST_DATA_OBJECT
ALGORITHM_AFTER_FORWARD: 1
FORWARD_DIRECTION: 0

ERROR: In /usr/src/structural-pipeline/build/VTK/IO/Legacy/vtkDataReader.cxx, line 402
vtkGenericDataObjectReader (0x14959e0): Unable to open file: surfaces/CC00186AN14-60900/vtk/CC00186AN14-60900.L.sphere.native.surf.vtk

ERROR: In /usr/src/structural-pipeline/build/VTK/Common/ExecutionModel/vtkExecutive.cxx, line 784
vtkCompositeDataPipeline (0x14962f0): Algorithm vtkGenericDataObjectReader(0x14959e0) returned failure for request: vtkInformation (0x1497640)
Debug: Off
Modified Time: 40
Reference Count: 1
Registered Events: (none)
Request: REQUEST_DATA_OBJECT
ALGORITHM_AFTER_FORWARD: 1
FORWARD_DIRECTION: 0

File surfaces/CC00186AN14-60900/vtk/CC00186AN14-60900.L.sphere.native.surf.vtk either contains no points or could not be read
Error: convert-pointset command returned non-zero exit status 1

I wonder whether I choose the wrong T1w and T2w file as the input? Which file does the released structure file derive from?

Thank you very much!

Jinlong Li