List of valid pybids filters?

Shotgunosine · August 21, 2023, 3:31pm

Is there a list of valid pybids filters somewhere?

adelavega · August 21, 2023, 5:50pm

It depends on what is found in the dataset but this is what pyBIDS uses to look for valid entities;

bids-standard/pybids/blob/master/bids/layout/config/bids.json

{
    "name": "bids",
    "entities": [
        {
            "name": "subject",
            "pattern": "[/\\\\]+sub-([a-zA-Z0-9]+)",
            "directory": "{subject}"
        },
        {
            "name": "session",
            "pattern": "[_/\\\\]+ses-([a-zA-Z0-9]+)",
            "mandatory": false,
            "directory": "{subject}{session}"
        },
        {
            "name": "sample",
            "pattern": "[_/\\\\]+sample-([a-zA-Z0-9]+)"
        },
        {
            "name": "task",

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