- fMRIPrep version: 23.1.4
- fMRIPrep command:
/opt/conda/envs/fmriprep/bin/fmriprep /dartfs-hpc/rc/lab/C/CANlab/labdata/data/WASABI/1080_wasabi /dartfs-hpc/rc/lab/C/CANlab/labdata/data/WASABI/derivatives/fmriprep participant --participant_label SID001641 --ignore slicetiming --resource-monitor --bold2t1w-dof 9 --dummy-scans 6 --notrack --nprocs 32 --omp-nthreads 5 --nthreads 32 --mem_mb 280000 --fs-license-file /optnfs/freesurfer/6.0.0/license.txt --cifti-output 91k --output-spaces T1w MNI152NLin2009cAsym fsnative fsaverage6 --skull-strip-fixed-seed -w /scratch/f003z4j/fmriprep-work/work-SID001641 --random-seed 42 --stop-on-first-crash --force-syn --use-syn-sdc --skip_bids_validation
Errors
Node Name: fmriprep_23_1_wf.single_subject_SID001641_wf.func_preproc_ses_17_task_bodymapST2_acq_mb8_run_01_wf.bold_std_trans_wf.bold_to_std_transform
File: /dartfs-hpc/rc/lab/C/CANlab/labdata/data/WASABI/derivatives/fmriprep/sub-SID001641/log/20230922-155620_a23920fd-0114-4ecf-b6e7-419114b8ff3d/crash-20230925-173951-f003z4j-bold_to_std_transform.a1-ac8b6fcd-9405-4637-afe7-2dadbd81fc62.txt
Working Directory: /scratch/f003z4j/fmriprep-work/work-SID001641/fmriprep_23_1_wf/single_subject_SID001641_wf/func_preproc_ses_17_task_bodymapST2_acq_mb8_run_01_wf/bold_std_trans_wf/_std_target_MNI152NLin6Asym.res2/bold_to_std_transform
Inputs:
args:
copy_dtype: True
default_value: 0.0
dimension:
environ: {}
float: True
input_image:
input_image_type:
interpolation: LanczosWindowedSinc
interpolation_parameters:
invert_transform_flags:
num_threads: 5
out_postfix: _trans
output_image:
print_out_composite_warp_file:
reference_image:
save_cmd: True
transforms:
Traceback (most recent call last):
File “/opt/conda/envs/fmriprep/lib/python3.10/site-packages/nipype/pipeline/plugins/multiproc.py”, line 67, in run_node
result[“result”] = node.run(updatehash=updatehash)
File “/opt/conda/envs/fmriprep/lib/python3.10/site-packages/nipype/pipeline/engine/nodes.py”, line 527, in run
result = self._run_interface(execute=True)
File “/opt/conda/envs/fmriprep/lib/python3.10/site-packages/nipype/pipeline/engine/nodes.py”, line 645, in _run_interface
return self._run_command(execute)
File “/opt/conda/envs/fmriprep/lib/python3.10/site-packages/nipype/pipeline/engine/nodes.py”, line 771, in _run_command
raise NodeExecutionError(msg)
nipype.pipeline.engine.nodes.NodeExecutionError: Exception raised while executing Node bold_to_std_transform.Traceback:
Traceback (most recent call last):
File “/opt/conda/envs/fmriprep/lib/python3.10/site-packages/nibabel/loadsave.py”, line 100, in load
stat_result = os.stat(filename)
FileNotFoundError: [Errno 2] No such file or directory: ‘/scratch/f003z4j/fmriprep-work/work-SID001641/fmriprep_23_1_wf/single_subject_SID001641_wf/func_preproc_ses_17_task_bodymapST2_acq_mb8_run_01_wf/bold_std_trans_wf/_std_target_MNI152NLin6Asym.res2/bold_to_std_transform/vol0326_xform-00326.nii.gz’During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File “/opt/conda/envs/fmriprep/lib/python3.10/site-packages/nipype/interfaces/base/core.py”, line 397, in run
runtime = self._run_interface(runtime)
File “/opt/conda/envs/fmriprep/lib/python3.10/site-packages/niworkflows/interfaces/itk.py”, line 186, in _run_interface
out_files = list(
File “/opt/conda/envs/fmriprep/lib/python3.10/concurrent/futures/_base.py”, line 621, in result_iterator
yield _result_or_cancel(fs.pop())
File “/opt/conda/envs/fmriprep/lib/python3.10/concurrent/futures/_base.py”, line 319, in _result_or_cancel
return fut.result(timeout)
File “/opt/conda/envs/fmriprep/lib/python3.10/concurrent/futures/_base.py”, line 451, in result
return self.__get_result()
File “/opt/conda/envs/fmriprep/lib/python3.10/concurrent/futures/_base.py”, line 403, in __get_result
raise self._exception
File “/opt/conda/envs/fmriprep/lib/python3.10/concurrent/futures/thread.py”, line 58, in run
result = self.fn(*self.args, **self.kwargs)
File “/opt/conda/envs/fmriprep/lib/python3.10/site-packages/niworkflows/interfaces/itk.py”, line 254, in _applytfms
runtime = xfm.run().runtime
File “/opt/conda/envs/fmriprep/lib/python3.10/site-packages/nipype/interfaces/base/core.py”, line 397, in run
runtime = self._run_interface(runtime)
File “/opt/conda/envs/fmriprep/lib/python3.10/site-packages/niworkflows/interfaces/fixes.py”, line 68, in _run_interface
_copyxform(
File “/opt/conda/envs/fmriprep/lib/python3.10/site-packages/niworkflows/utils/images.py”, line 79, in _copyxform
resampled = nb.load(out_image, mmap=False)
File “/opt/conda/envs/fmriprep/lib/python3.10/site-packages/nibabel/loadsave.py”, line 102, in load
raise FileNotFoundError(f"No such file or no access: ‘{filename}’")
FileNotFoundError: No such file or no access: ‘/scratch/f003z4j/fmriprep-work/work-SID001641/fmriprep_23_1_wf/single_subject_SID001641_wf/func_preproc_ses_17_task_bodymapST2_acq_mb8_run_01_wf/bold_std_trans_wf/_std_target_MNI152NLin6Asym.res2/bold_to_std_transform/vol0326_xform-00326.nii.gz’