Hi folks,
I’ve a student utilizing fmriprep, and the single fmriprep has generated close to 400 processes that have become defunct.
fmriprep was invoked with:
fmriprep /data /out participant --participant_label PM226OX2 --nthreads 1 --template-resampling-grid 2mm
What is up with all of these processes? They are things like (the trailing number is the coutn of defunct with that name):
apas2aseg 6
bbregister 15
cat 16
grep 172
IsLTA 64
‘main’ 1
mri_info 5
mri_motion_corr 6
mri_nu_correct. 3
mris_info 6
pctsurfcon 4
python 2
recon-all 37
reg2subject 32
talairach_avi 7
tcsh 7
vertexvol 14
Also, the student reports anecdotally that subsequent processing seems to take longer and longer.
It is fmriprep version v1.3.0.post2 running inside docker.
Clues on how to make this run cleaner?
Robert