I am trying to use the fMRIPrep pipeline for preprocessing my macaque’s data.
I have made my template (including a probabilistic brain mask, and probabilistic tissue maps) visible to Template flow but I’m still getting some unsolvable errors like this one:
FileNotFoundError: No such file or directory '' for output 'brain_mask' of a TemplateFlowSelect interface at node name: fmriprep_wf.single_subject_032145_wf.anat_preproc_wf.anat_norm_wf.tf_select
Here is an screenshot of my template which can be found at this site.
The template has the resolution of 0.5 mm so I named them like this.
And this is the command that I’m sending, based on the documents:
fmriprep-docker /home/matin/school/Neuroscience/monkey_test/macaque_data /home/matin/school/Neuroscience/monkey_test/output participant --participant-label 032145 --fs-license-file /home/matin/school/Neuroscience/freesurfer.txt --output-spaces /home/matin/.cache/templateflow/tpl-inia19
I am pretty sure that I’m not doing some steps correctly. Could anyone please help me in solving this issue?