Hi All,
I am trying to run mriqc on HCP using docker, like
docker run -it --rm -v \
$bids_dir:/data:ro \
-v $out_dir:/out poldracklab/mriqc:latest \
/data /out participant --participant_label sub-103818
and I got the following message. Do you know what could be the reason and how I could fix it (if can be fixed)?
The data passed the BIDS format test.
Thank you in advance.
F.
The use of ``template_resolution`` is deprecated
The use of ``template_resolution`` is deprecated
The use of ``template_resolution`` is deprecated
200520-20:19:39,207 nipype.interface WARNING:
calculating summary stats of label "gm" in a very small mask (0 voxels)
200520-20:19:39,257 nipype.workflow WARNING:
Storing result file without outputs
200520-20:19:39,258 nipype.workflow WARNING:
[Node] Error on "mriqc_wf.anatMRIQC.ComputeIQMs.measures"
(/tmp/work/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..data..sub-103818..ses-2..anat..sub-
103818_ses-2_T1w.nii/measures)
200520-20:19:40,586 nipype.workflow ERROR:
Node measures.a1 failed to run on host a10640617675.
200520-20:19:40,589 nipype.workflow ERROR:
[...]
IndexError: cannot do a non-empty take from an empty axes.