Hello,
I’m just getting mriqc running using singularity, and although it provides output just fine for single subjects, I keep getting the following nipype.utils warnings after it starts running (initial command followed by initial output). I’m using Centos7 and just set this up a couple days ago so have the latest version of mriqc. Not sure if it matters, but my python default version is Python 2.7.5 because the yum installer on Centos 7 needs it to be this for it to work. Any ideas on how to stop these warnings? Thanks!!
[myID@mycomputer ~/]$ singularity run --cleanenv /home/mriqc_latest.simg /home/myID/TPC_Project/bids /home/TPC_Project/fmriprep_output/sub-tpc004/mriqc participant --participant_label tpc004
200717-19:36:51,529 cli IMPORTANT:
Running MRIQC version 0.15.2:
* BIDS dataset path: /home/TPC_Project/bids.
* Output folder: /home/TPC_Project/fmriprep_output/sub-tpc004/mriqc.
* Analysis levels: ['participant'].
200717-19:36:51,822 nipype.utils WARNING:
Could not check for version updates:
Connection to server could not be made
200717-19:36:52,54 nipype.utils WARNING:
Could not check for version updates:
Connection to server could not be made
200717-19:37:04,646 cli WARNING:
IMPORTANT: Anonymized quality metrics (IQMs) will be submitted to MRIQC’s metrics repository. Submission of IQMs can be disabled using the --no-sub
argument. Please visit https://mriqc.readthedocs.io/en/latest/dsa.html to revise MRIQC’s Data Sharing Agreement.
200717-19:37:26,925 nipype.utils WARNING:
Could not check for version updates:
Connection to server could not be made
200717-19:37:26,950 nipype.utils WARNING:
Could not check for version updates:
Connection to server could not be made
200717-19:37:26,954 nipype.utils WARNING:
Could not check for version updates:
Connection to server could not be made
200717-19:37:26,966 nipype.utils WARNING:
Could not check for version updates:
Connection to server could not be made
200717-19:37:26,980 nipype.utils WARNING:
Could not check for version updates:
Connection to server could not be made
200717-19:37:26,983 nipype.utils WARNING:
Could not check for version updates:
Connection to server could not be made
200717-19:37:26,991 nipype.utils WARNING:
Could not check for version updates:
Connection to server could not be made
200717-19:37:27,16 nipype.utils WARNING:
Could not check for version updates:
Connection to server could not be made
200717-19:37:27,27 nipype.utils WARNING:
Could not check for version updates:
Connection to server could not be made
200717-19:37:27,34 nipype.utils WARNING:
Could not check for version updates:
Connection to server could not be made
200717-19:37:27,37 nipype.utils WARNING:
Could not check for version updates:
Connection to server could not be made
200717-19:37:27,128 nipype.utils WARNING:
Could not check for version updates:
Connection to server could not be made