Our participant IDs all start with a “s” (e.g., s001, s002, etc). However, MRIQC drops these when parsing the inputs, then complaints participant label 001, 002, etc doesn’t exist.
mriqc /data/[REDACTED]/BIDS ${TMPDIR}/s23279.out participant --participant_label s23279 -w ${TMPDIR}/s23279.wrk --n_procs 1 --no-sub
mriqc: error: One or more participant labels were not found in the BIDS directory: 23279.