Hello, I get the following error when running mriqc for multiple functional runs:
RuntimeError: (--participant_label null 31003 null) (--session-id 01) (--run-id 04) (--task-id highspeed) did not result in matches within the BIDS directory (/path/to/sourcedata).
This is how the relevant data structure looks like:
/path/to/sourcedata
├── CHANGES
├── dataset_description.json
├── participants.tsv
├── README
├── sub-31003
│ ├── ses-01
│ │ ├── anat
│ │ │ ├── sub-31003_ses-01_acq-prenorm_T1w.json
│ │ │ └── sub-31003_ses-01_acq-prenorm_T1w.nii.gz
│ │ ├── fmap
│ │ ├── func
│ │ │ ├── sub-31003_ses-01_task-highspeed_acq-nonorm_run-01_bold.json
│ │ │ ├── sub-31003_ses-01_task-highspeed_acq-nonorm_run-01_bold.nii.gz
│ │ │ ├── sub-31003_ses-01_task-highspeed_acq-nonorm_run-01_events.tsv
│ │ │ ├── sub-31003_ses-01_task-highspeed_acq-nonorm_run-02_bold.json
│ │ │ ├── sub-31003_ses-01_task-highspeed_acq-nonorm_run-02_bold.nii.gz
│ │ │ ├── sub-31003_ses-01_task-highspeed_acq-nonorm_run-02_events.tsv
│ │ │ ├── sub-31003_ses-01_task-highspeed_acq-nonorm_run-03_bold.json
│ │ │ ├── sub-31003_ses-01_task-highspeed_acq-nonorm_run-03_bold.nii.gz
│ │ │ ├── sub-31003_ses-01_task-highspeed_acq-nonorm_run-03_events.tsv
│ │ │ ├── sub-31003_ses-01_task-highspeed_acq-nonorm_run-04_bold.json
│ │ │ ├── sub-31003_ses-01_task-highspeed_acq-nonorm_run-04_bold.nii.gz
│ │ │ ├── sub-31003_ses-01_task-highspeed_acq-nonorm_run-04_events.tsv
│ │ │ ├── sub-31003_ses-01_task-highspeed_acq-prenorm_run-01_bold.json
│ │ │ ├── sub-31003_ses-01_task-highspeed_acq-prenorm_run-01_bold.nii.gz
│ │ │ ├── sub-31003_ses-01_task-highspeed_acq-prenorm_run-01_events.tsv
│ │ │ ├── sub-31003_ses-01_task-highspeed_acq-prenorm_run-02_bold.json
│ │ │ ├── sub-31003_ses-01_task-highspeed_acq-prenorm_run-02_bold.nii.gz
│ │ │ ├── sub-31003_ses-01_task-highspeed_acq-prenorm_run-02_events.tsv
│ │ │ ├── sub-31003_ses-01_task-highspeed_acq-prenorm_run-03_bold.json
│ │ │ ├── sub-31003_ses-01_task-highspeed_acq-prenorm_run-03_bold.nii.gz
│ │ │ ├── sub-31003_ses-01_task-highspeed_acq-prenorm_run-03_events.tsv
│ │ │ ├── sub-31003_ses-01_task-highspeed_acq-prenorm_run-04_bold.json
│ │ │ ├── sub-31003_ses-01_task-highspeed_acq-prenorm_run-04_bold.nii.gz
│ │ │ └── sub-31003_ses-01_task-highspeed_acq-prenorm_run-04_events.tsv
│ │ └── sub-31003_ses-01_scans.tsv
│ └── ses-02
│ ├── anat
│ │ ├── sub-31003_ses-02_acq-prenorm_T1w.json
│ │ └── sub-31003_ses-02_acq-prenorm_T1w.nii.gz
│ ├── fmap
│ ├── func
│ │ ├── sub-31003_ses-02_task-highspeed_acq-nonorm_run-01_bold.json
│ │ ├── sub-31003_ses-02_task-highspeed_acq-nonorm_run-01_bold.nii.gz
│ │ ├── sub-31003_ses-02_task-highspeed_acq-nonorm_run-01_events.tsv
│ │ ├── sub-31003_ses-02_task-highspeed_acq-nonorm_run-02_bold.json
│ │ ├── sub-31003_ses-02_task-highspeed_acq-nonorm_run-02_bold.nii.gz
│ │ ├── sub-31003_ses-02_task-highspeed_acq-nonorm_run-02_events.tsv
│ │ ├── sub-31003_ses-02_task-highspeed_acq-nonorm_run-03_bold.json
│ │ ├── sub-31003_ses-02_task-highspeed_acq-nonorm_run-03_bold.nii.gz
│ │ ├── sub-31003_ses-02_task-highspeed_acq-nonorm_run-03_events.tsv
│ │ ├── sub-31003_ses-02_task-highspeed_acq-nonorm_run-04_bold.json
│ │ ├── sub-31003_ses-02_task-highspeed_acq-nonorm_run-04_bold.nii.gz
│ │ ├── sub-31003_ses-02_task-highspeed_acq-nonorm_run-04_events.tsv
│ │ ├── sub-31003_ses-02_task-highspeed_acq-prenorm_run-01_bold.json
│ │ ├── sub-31003_ses-02_task-highspeed_acq-prenorm_run-01_bold.nii.gz
│ │ ├── sub-31003_ses-02_task-highspeed_acq-prenorm_run-01_events.tsv
│ │ ├── sub-31003_ses-02_task-highspeed_acq-prenorm_run-02_bold.json
│ │ ├── sub-31003_ses-02_task-highspeed_acq-prenorm_run-02_bold.nii.gz
│ │ ├── sub-31003_ses-02_task-highspeed_acq-prenorm_run-02_events.tsv
│ │ ├── sub-31003_ses-02_task-highspeed_acq-prenorm_run-03_bold.json
│ │ ├── sub-31003_ses-02_task-highspeed_acq-prenorm_run-03_bold.nii.gz
│ │ ├── sub-31003_ses-02_task-highspeed_acq-prenorm_run-03_events.tsv
│ │ ├── sub-31003_ses-02_task-highspeed_acq-prenorm_run-04_bold.json
│ │ ├── sub-31003_ses-02_task-highspeed_acq-prenorm_run-04_bold.nii.gz
│ │ └── sub-31003_ses-02_task-highspeed_acq-prenorm_run-04_events.tsv
│ └── sub-31003_ses-02_scans.tsv
MRIQC works fine on my T1w data. However, I only specify e.g., --participant-label 31003
, --session-id 01
and --m T1w
in this case. Thus, I suspect that the problem with the functional data might be related to the --run-id
or --task-id
argument. Perhaps it might be also related to the acq
specification in my data files.
A similar issue has already been reported here.
Any help would be very much appreciated! Thanks in advance!