Hello,
I tried re-running the new version of fMRIPREP (1.0.0-rc10) on a subject that I had previously processed successfully with no warnings or issues using fMRIPREP 1.0.0-rc8. With this new version, I have this new warning that starts spamming hundreds of times and did not appear in rc8:
171110-02:11:12,311 interface WARNING:
Affines of input and reference images do not match, CopyXForm will probably make the input image useless.
Any idea of what it may be? Is the warning harmless? Should I go back to rc8? I’m including below the beginning of the log file, if it helps.
Thank you!
Running fMRIPREP version 1.0.0-rc10:
- Participant list: [‘226854’].
- Run identifier: 20171110-020751_ed44371c-0885-4483-9b74-390d9e535bcd.
171110-02:07:53,825 workflow WARNING:
No fieldmaps found or they were ignored, building base workflow for dataset /data/h_zald_lab/Fran/tts_test/BIDS_TTS_Test/sub-226854/func/sub-226854_task-mid_run-01_bold.nii.gz.
171110-02:07:57,92 workflow WARNING:
No fieldmaps found or they were ignored, building base workflow for dataset /data/h_zald_lab/Fran/tts_test/BIDS_TTS_Test/sub-226854/func/sub-226854_task-mid_run-02_bold.nii.gz.
171110-02:08:00,980 workflow WARNING:
No fieldmaps found or they were ignored, building base workflow for dataset /data/h_zald_lab/Fran/tts_test/BIDS_TTS_Test/sub-226854/func/sub-226854_task-mid_run-03_bold.nii.gz.
171110-02:08:13,497 interface WARNING:
No ‘t2w’ images found for sub-
171110-02:08:13,497 interface WARNING:
No ‘fmap’ images found for sub-
171110-02:08:13,498 interface WARNING:
No ‘sbref’ images found for sub-
171110-02:09:43,908 cli WARNING:
Captured warning (<class ‘UserWarning’>): The behaviour of affine_transform with a one-dimensional array supplied for the matrix parameter has changed in scipy 0.18.0.
171110-02:10:05,844 niworkflows INFO:
Successfully created report (/data/h_zald_lab/Fran/tts_test/work_226854_nofs/fmriprep_wf/single_subject_226854_wf/func_preproc_task_mid_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/mask_reportlet/report.html)
171110-02:11:12,311 interface WARNING:
Affines of input and reference images do not match, CopyXForm will probably make the input image useless.
171110-02:11:12,313 interface WARNING:
Affines of input and reference images do not match, CopyXForm will probably make the input image useless.
171110-02:11:12,341 interface WARNING:
Affines of input and reference images do not match, CopyXForm will probably make the input image useless.
171110-02:11:12,349 interface WARNING:
Affines of input and reference images do not match, CopyXForm will probably make the input image useless.
171110-02:11:12,400 interface WARNING:
Affines of input and reference images do not match, CopyXForm will probably make the input image useless.