I used the Nilearn tools to visualize my data on a Jupyter Notebook.
However, I have data from the spinal cord and when I display the spinal cord images on the background of a spinal cord anatomical image, I get a flattened image in the height direction for x and y slices, not the z slices. On the other hand, if I visualize this same image on an anatomical image including the brain and the spinal cord I don’t have this problem.
I used interactive plotting with plotting.view_img() with Nilearn 0.6.2
Do you have any suggestions to improve this visualization of this kind of data?
I try to modify some parameters in : ‘html_stat_map.py’ but I only success to modify the size of the viewer.
Thank for your help