Nilearn glass brain with multiple overlay

Saw this image and eyeball test says it’s nilearn’s glass brain. Any idea how to get the stat map underneath with the outlined stat overlay on top? I know there are other tools that can do it (AFNI, FSLeyes) but I haven’t figured out how to get both the stat map underlay (with alpha turned way down) and the overlay (I’m guessing mask + contour).

image

should soon be part of nilearn: [ENH] add transparency to overlays for volume based plots by Remi-Gau · Pull Request #5151 · nilearn/nilearn · GitHub

transparency + contour should be doable with glass brains after the PR is merged

see associated examples: Plotting images with transparent thresholding - Nilearn

1 Like

Ah cool. Thanks @Remi-Gau