Saw this image and eyeball test says it’s nilearn’s glass brain. Any idea how to get the stat map underneath with the outlined stat overlay on top? I know there are other tools that can do it (AFNI, FSLeyes) but I haven’t figured out how to get both the stat map underlay (with alpha turned way down) and the overlay (I’m guessing mask + contour).
should soon be part of nilearn: [ENH] add transparency to overlays for volume based plots by Remi-Gau · Pull Request #5151 · nilearn/nilearn · GitHub
transparency + contour should be doable with glass brains after the PR is merged
see associated examples: Plotting images with transparent thresholding - Nilearn
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