I have tried to run the gclda model using the Neurosynth & Neuroquery database. Everything worked well for the former (thanks for your previous advice), but I am running into an issue while creating the files object using the nimare.extract.fetch_neuroquery function. Although are the necessary neuroquery files are in the appropriate folder, it says the index list is empty. It looks like it looking for a single file containing “combined” “neuroquery7547” and “tfidf” in its name. Changing “7547” for “6308” worked, as there is a file named “data-neuroquery_version-1_vocab-neuroquery6308_source-combined_type-tfidf_features.npz” in the folder.
However, I am not sure if this is correct. I initially thought the command should fetch three different files, no? I thought this may be due to a typo on the NiMARE instructions, but I have no idea. I thought your help would be beneficial at this point.
Let me know!
‘’‘files = nimare.extract.fetch_neuroquery(
neuroquery_db = files’’’