I’m trying to run autorecon2-cp
with nipype but I’m getting this error:
reconall = ReconAll()
reconall.inputs.subject_id = 'sub01'
reconall.inputs.directive = 'autorecon2-cp'
reconall.inputs.subjects_dir = '/data/FS/'
reconall.cmdline
nipype.interface INFO:
recon-all complete : Not running
u'echo recon-all: nothing to do'
if I run this command in the command line however
recon-all -autorecon2-cp -sd /data/FS/ -s sub01
it runs without a problem.
My nipype version is 1.2.3.