I’ve run into two issues with Nipype when running it on a cluster with either several processes (MultiCore plugin) or with separate jobs (PBS plugin).
- I’ve written a small interface that I’ve put into a separate file (myinterface.py). When I use parallel jobs, Python cannot find this file because the working directory is different. How can I tell nipype engine to import it or where should I put it so that it will be available?
- Some tasks like data grabber are very easy and it would make more sense to run them on a local machine while running other nodes in parallel. Is this possible?