There’s a lot going on there
Is there a tutorial or walkthrough on how to run the workflow?
It seems to involve building a Docker container, then I assume folders would be aliased, similar to running fmriprep-docker, etc. My attempts so far have failed.
Would appreciate any help getting started.
macOS attempt from the command line
(base) ➜ ds003-post-fMRIPrep-analysis git:(master) docker build -f ./Dockerfile ./postfsl
Sending build context to Docker daemon 5.167kB
Step 1/24 : FROM ubuntu:xenial-20161213
Step 2/24 : COPY .docker/neurodebian.gpg /usr/local/etc/neurodebian.gpg
COPY failed: stat /var/lib/docker/tmp/docker-builder142440907/.docker/neurodebian.gpg: no such file or directory
PyCharm seemed to recognize that the Dockerfile had meaning, so I tried running
Failed to import duecredit due to No module named 'duecredit'
Traceback (most recent call last):
File "/src/run.py", line 6, in <module>
from templateflow.api import get as tpl_get, templates as get_tpl_list
File "/usr/local/miniconda/lib/python3.7/site-packages/templateflow/api.py", line 6, in <module>
from .conf import TF_LAYOUT, TF_S3_ROOT, TF_USE_DATALAD
File "/usr/local/miniconda/lib/python3.7/site-packages/templateflow/conf/__init__.py", line 81, in <module>
ignore=['.git', '.datalad', '.gitannex', '.gitattributes', 'scripts'])
File "/usr/local/miniconda/lib/python3.7/site-packages/bids/layout/layout.py", line 188, in __init__
TypeError: __init__() got an unexpected keyword argument 'ignore'
Edit: used pip3 from the command line to install duecredit, but the error persists.