No space left for MRIQC

Anyone familiar with this error? Thanks!

Node: workflow_enumerator.anatMRIQCT1w.segmentation
Working directory: /usr/local/src/mriqc/work/workflow_enumerator/anatMRIQCT1w/in_file…data…sub-8511…anat…sub-8511_run-01_T1w.nii.gz/segmentation

Node inputs:

args =
bias_iters =
bias_lowpass =
hyper =
ignore_exception = False
img_type = 1
in_files = [’/usr/local/src/mriqc/work/workflow_enumerator/anatMRIQCT1w/AFNISkullStripWorkflow/in_file…data…sub-8511…anat…sub-8511_run-01_T1w.nii.gz/sstrip_orig_vol/sub-8511_run-01_T1w_conformed_calc.nii.gz’]
init_seg_smooth =
init_transform =
iters_afterbias =
manual_seg =
mixel_smooth =
no_bias =
no_pve =
number_classes =
other_priors =
out_basename = segment
output_biascorrected =
output_biasfield =
output_type = NIFTI_GZ
probability_maps =
segment_iters =
segments = True
terminal_output =
use_priors =
verbose =

OSError: [Errno 28] No space left on device

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File “/usr/local/miniconda/lib/python3.6/site-packages/niworkflows/nipype/pipeline/plugins/”, line 68, in run_node
result[‘result’] =
File “/usr/local/miniconda/lib/python3.6/site-packages/niworkflows/nipype/pipeline/engine/”, line 498, in run
self, report_type=‘postexec’, is_mapnode=isinstance(self, MapNode))
File “/usr/local/miniconda/lib/python3.6/site-packages/niworkflows/nipype/pipeline/engine/”, line 232, in write_report
OSError: [Errno 28] No space left on device

It means you are out of disk space. If you are running MRIQC via docker for Mac/Windows there is a docker setting to specify how much virtual disk space docker has access to.

Thanks! found it.
Also do you have any suggestion for memory and CPU setting?

As much as you can really - MRIQC will detect what resources you made available to it and try to use them as efficiently as possible. I doubt it will work if you assign less than 4GB of RAM.