Hi,
Two subjects of mine got this error when being processed through fmriprep 1.5.4 (crash log below). Does anyone know the cause and a fix?
Thanks,
HY
Node: fmriprep_wf.single_subject_015_wf.func_preproc_task_test_run_01_echo_1_wf.bold_bold_trans_wf.bold_transform
Working directory: /localscratch/hyang336.41584104.0/fmriprep_wf/single_subject_015_wf/func_preproc_task_test_run_01_echo_1_wf/bold_bold_trans_wf/bold_file…project…6050199…switt4…switt4-bids…Kohler…PPC_MD…bids…sub-015…func…sub-015_task-test_run-01_echo-3_bold.nii.gz/bold_transform
Node inputs:
args =
copy_dtype = True
default_value = 0.0
dimension =
environ = {}
float = True
input_image =
input_image_type =
interpolation = LanczosWindowedSinc
interpolation_parameters =
invert_transform_flags =
num_threads = 8
out_postfix = _trans
output_image =
print_out_composite_warp_file =
reference_image =
save_cmd = True
transforms =
Traceback (most recent call last):
File “/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/legacymultiproc.py”, line 69, in run_node
result[‘result’] = node.run(updatehash=updatehash)
File “/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py”, line 479, in run
result = self._run_interface(execute=True)
File “/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py”, line 585, in _run_interface
return self._run_command(execute)
File “/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py”, line 678, in _run_command
result = self._interface.run(cwd=outdir)
File “/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py”, line 382, in run
runtime = self._run_interface(runtime)
File “/usr/local/miniconda/lib/python3.7/site-packages/niworkflows/interfaces/itk.py”, line 113, in _run_interface
xfms_list = _arrange_xfms(transforms, num_files, tmp_folder)
File “/usr/local/miniconda/lib/python3.7/site-packages/niworkflows/interfaces/itk.py”, line 294, in _arrange_xfms
’ the number of input image files (%d).’ % (nxforms, num_files))
RuntimeError: Number of transforms (144) found in the ITK file does not match the number of input image files (143).