Open source datasets

Hi there,
I am looking for some open source datasets that have already been preprocessed using fMRIPrep preferably. Where is the best place to locate these?

Thanks,
Chris

Chris:

Here are some open-source MRI datasets, but I doubt if they have been preprocessed using fMRIPrep:

Human Connectome Project: http://www.humanconnectome.org/

1000 Functional Connectomes Project: http://fcon_1000.projects.nitrc.org/fcpClassic/FcpTable.html

Consortium for Reliability and Reproducibility: http://fcon_1000.projects.nitrc.org/indi/CoRR/html/index.html

My Connectome Project: http://myconnectome.org/wp/

SILCODE: http://www.alzheimer.org.cn/

OpenfMRI: https://openfmri.org/

UK Biobank: https://www.ukbiobank.ac.uk/

NDA: https://nda.nih.gov/

Neuroinformatics database: https://nda.nih.gov/

OpenNEURO: https://openneuro.org/

Brain Image Library: http://www.brainimagelibrary.org/

BrainMap: http://www.brainmap.org/

The Center for Integrated Molecular Brain Imaging Database: https://cimbi.dk/index.php

CENTRAL: http://epilepsy-database.eu/

BNCIHorizon 2020: http://bnci-horizon-2020.eu/

Neurosynth: https://neurosynth.org/

I hope this helps!

Best,
Lily

3 Likes

If you go to OpenNeuro and search “fmriprep”, at least the first few have fMRIPrep derivatives. Also, I believe that the OpenNeuro Dataset Metadata Google Sheet, there is a column named “Processed data?”. This doesn’t indicate what kind of processed data are available, but if the data are fMRI then there’s a good chance that processed data on OpenNeuro would be fMRIPrepped.

1 Like

@You_Cheng @tsalo
Hi Both,
A big thank you for your suggestions and help. I’ve combed through and found a few suitable candidates.

Many Thanks,
Chris

here are some other datasets that include MRI and functional connectivity: https://connectomelab.github.io/changingconnectomes/chapter11/

1 Like