Parameter Not Defined in tedana's Example Code

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1

Hi,

I am applying tedana on fMRIPrep output of multi-echo fmri data (included the flag --me-output-echos in my command for fMRIPrep) to preprocess the images. There is a sample code to apply tedana on fmriprep outputs on tedana’s FAQ, but there is a parameter time on line 72 of the code which is not defined in the code. I am not sure how to define that parameter or what to use instead of that as I am new to ME.

Highly appreciate your guidance.

Kind regards,
Ali

2

There are many files in tedana, so we can’t do much with just a line number. Can you post the full traceback?

Additionally, can you include info about the tedana version you use? There is a new template for software support posts that has some fields that would also be useful for debugging.

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Sorry if the question was not clear enough.

The tedana version is “0.0.12” and the code I refered to is attached here
auto_tedana.txt (3.5 KB). The code is obtained from this link, the first code on the tedana page.

Thank you,
Ali

4

Ah, I see. So it’s not the core tedana code. Looking at that example, the problem seems to be that time (which is a library) is not imported. You can add import time to the beginning of the script.

5

Thanks a lot for your time and guidance, it worked!

Ali

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