Hi everyone,

Did anyone try to analyze the data pre-processed by fmriprep (we used version 1.0.0-rc2) with fsl?

We need to perform first level, second level and group level analysis, and we couldn’t make fsl’s feat perform it without registering the data again to the MNI (we used linear 3 dofs to minimize it as much as possible, but we still want to find a way to avoid registering the data twice).

Using randomise is not a solution since we must perform the second level analysis, for which fsl requires the registration, even when we are using randomise for the group analysis (and we also want to be able to use flame and not just randomise).

Thank you very much in advance!

Rotem