Summary of what happened:
Dear fmriprep experts,
after updating to version 23.2.1 we sometimes encouter problems with the registration of fieldmaps to functional images. This happened in some rare cases (roughly 3 out of 200 functional runs) in our projects. We have a Siemens MAGNETOM Prisma Scanner, and use two magnitude images and the phasediff image for sdc. We would be grateful for any help or ideas!
Best
Simon
Command used (and if a helper script was used, a link to the helper script or the command generated):
singularity run \
--bind ${INPUT}:/data \
--bind ${WORK_DIR}:/work \
--bind ${OUTPUT}:/out \
--cleanenv \
${FMRIPREPIMG} \
--clean-workdir \
--skip-bids-validation \
--participant-label $SUBJID \
--md-only-boilerplate \
--fs-license-file /data/LICENSE.txt \
--nthreads $nthreads \
--stop-on-first-crash \
--cifti-output 91k \
--use-aroma \
-w /work \
/data /out participant
Version:
23.2.1
Environment (Docker, Singularity / Apptainer, custom installation):
singularity
Screenshots / relevant information:
This is the alignment under version 23.2.1:
This is the alignment under version 20.2.1:
