Dear all,
Since the new update of fmriprep 21.0.1 we are trying to preprocess our data with the top up scans. We tried it on two separate sessions of one subject first to see whether it works. On one of them, it worked and gave the right output, but on the other it did not work.
Here the trees for the two sessions:
/dbstore/Rijnstate/SYNAPSE/BIDS4/sub-0071 (for this session it works!)
├── anat
│ ├── sub-0071_T1w.json
│ └── sub-0071_T1w.nii.gz
├── fmap
│ ├── sub-0071_dir-AP_epi.json
│ └── sub-0071_dir-AP_epi.nii.gz
└── func
├── sub-0071_task-rest_bold.json
└── sub-0071_task-rest_bold.nii.gz
/dbstore/Rijnstate/SYNAPSE/BIDS4/sub-0073 (for this session it does not work…)
├── anat
│ ├── sub-0073_T1w.json
│ └── sub-0073_T1w.nii.gz
├── fmap
│ ├── sub-0073_dir-AP_epi.json
│ └── sub-0073_dir-AP_epi.nii.gz
└── func
├── sub-0073_task-rest_bold.json
└── sub-0073_task-rest_bold.nii.gz
Both _epi.json files are identical expect from the field ’ IntendedFor ’ .
For the second session (0073), we do not get an error, but the top up scan is simply not taken into account.
The data are conform BIDS structure.
Thanks for your help!