This was indeed the case, I changed it to BIDS/derivatives. And fmriprep was finally running for 4 hours, which is good. However, what I do not understand is that it put the derivatives folder in the map that is one level higher than the BIDS map, even though the BIDS map is my root map… The structure is like this ~/SYNAPSE/BIDS/[raw data structure], and fmriprep made a new folder derivatives in /SYNAPSE/derivatives. Any idea why? My commmand for the output was /BIDS/derivatives, so I assumed that it would make a new folder in folder BIDS.
I assume that we need to get some sort of preprocessed file out of fmriprep, but we only got the logs… Without any warning or error messages in this path:
I guess something is still going wrong. Could you help us with that?
Thanks in advance.