Summary of what happened:
I’m executing a rebuild of mrtrix_multishell_msmt_ACT-hsvs and I’m not sure how the atlases((qsirecon_wf\sub1094_mrtrix_multishell_msmt_hsvs\sub_1094_space_T1w_desc_preproc_recon_wf\qsirecon_anat_wf\get_atlases）) are generated inside the work file.From the json file I can see a matrix transform function (sub-1094_from-MNI152NLin2009cAsym_to_T1w_mode-image_xfm.h5), a reference image (sub-1094_space-T1w_desc-preproc_dwi.nii. gz), a set of atlases (atlas_names : ['schaefer100', 'schaefer200', 'schaefer400', 'brainnetome246', 'aicha384', 'gordon333', 'aal116']), and then by some function to tpl-MNI152NLin2009cAsym_res-01_atlas-AICHA384Ext_desc-LPS_dseg_to_dwi.nii.gz, and then finally through labelconvert to generate tpl-MNI152NLin2009cAsym_res-01_ atlas-Schaefer2018Ext_desc200Parcels7NetworksLPS_dseg_to_dwi.mif. my question is what is the main this transformation function, where can I see the exact transformation process (parameter settings) and where can I find this raw atlases (I’m in the docker container qsirecon_atlases found these atlases)?Another question is how do I view those pklz files？
Version:
0.17.0
Environment (Docker, Singularity, custom installation):
Docker