I’m using pyAFQ to create streamline profiles. However, the results are somewhat poor, which is mainly due to data quality. I was hoping to get better results by providing T1 images and segmentations - the pyAFQ Documentation states that t1 images and segmentations can be used. However, in the pyAFQ.api.participant.ParticipantAFQ method I don’t see in which **kwargs you would specify the path to T1 image and segmentation. Unfortunately, the data is not in BIDS format therefore GroupAFQ is not an option.
All help is appreciated!