Qsiprep 0.20.0 release on PyPi?

Software Support
1

Hello,

I’d like to use slice-to-volume motion correction (which is only implemented in the cuda version of eddy) on my dwi data but ran into this issue with qsiprep 0.19.1. I downloaded the source code of the latest release (0.20.0) but don’t know how to get the corresponding docker container with the updated cuda libraries. I tested eddy’s slice-to-vol correction on 0.16.1 with nice results but I’d like to avoid using an older qsiprep version for my preprocessing, if possible. Will the latest qsiprep release (0.20.0) be available on PyPi soon? Alternatively, are there instructions to install it without PyPi?

Thanks,
Jan

2

Hi @jhau,

If you have Docker with the NVIDIA container toolkit and NVIDIA/CUDA installed on your local machine, you can try docker run -it --rm --gpus all $OTHER_DOCKER_ARGS pennbbl/qsiprep:0.20.0 $QSIPREP_ARGUMENTS.

Best,
Steven

3

I was able to get it to work. Thanks a lot @Steven!

Best,
Jan

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