Summary of what happened:
My data was in BIDS format. In addition to the DWI data, I acquired a field map, which was a b0 image with the inverse phase-encoding direction. However, in the final HTML report, I noticed that the susceptibility distortion correction was not applied.
Command used (and if a helper script was used, a link to the helper script or the command generated):
singularity run /xxx/qsiprep-1.0.0.sif /xxx/bids /output participant --participant-label sub-LM001 --fs-license-file /xxx/license.txt --output-resolution 1.8
Version:
QSIPrep 1.0.0
Environment (Docker, Singularity / Apptainer, custom installation):
Singularity
Data formatted according to a validatable standard? Please provide the output of the validator:
├── anat
│ ├── sub-LM001_ses-T1_T1w.json
│ └── sub-LM001_ses-T1_T1w.nii.gz
├── dwi
│ ├── sub-LM001_ses-T1_dwi.bval
│ ├── sub-LM001_ses-T1_dwi.bvec
│ ├── sub-LM001_ses-T1_dwi.json
│ └── sub-LM001_ses-T1_dwi.nii.gz
└── fmap
├── sub-LM001_ses-T1_dir-PA_epi.bval
├── sub-LM001_ses-T1_dir-PA_epi.bvec
├── sub-LM001_ses-T1_dir-PA_epi.json
└── sub-LM001_ses-T1_dir-PA_epi.nii.gz
json setup:
sub-LM001_ses-T1_dir-PA_epi.json
"ConversionSoftware": "dcm2niix",
"ConversionSoftwareVersion": "v1.0.20240202",
"Dcm2bidsVersion": "3.1.1",
"B0FieldIdentifier": "fmap_dwi"
sub-LM001_ses-T1_dwi.json
"ConversionSoftware": "dcm2niix",
"ConversionSoftwareVersion": "v1.0.20240202",
"Dcm2bidsVersion": "3.1.1",
"B0FieldSource": "fmap_dwi",
"B0FieldIdentifier": "fmap_dwi"