Hi,
Is it possible to get the output of QSIprep in EPI native space? without the AC-PC alignment. Thanks in advance.
Best regards,
Manuel
Hi,
Is it possible to get the output of QSIprep in EPI native space? without the AC-PC alignment. Thanks in advance.
Best regards,
Manuel
At this time, I do not believe it is an option built into QSIPrep. However, you can apply the inverse transform of the native-to-ACPC warp to your images. It can be found in /YOURWORKDIR/qsiprep_wf/single_subject_XX_wf/dwi_preproc_wf/b0_anat_coreg/itk_to_rigid/
.
Steven
Thanks! this will do the trick
MANAGED BY INCF