QSIPrep Warning use of incorrect or incomplete LUT file(s) in labelconvert, or very poor registration

What is this warning mean?

stderr 2021-04-01T10:58:27.468881:tck2connectome: [WARNING] The following nodes are missing from the parcellation image:
210401-10:58:27,469 nipype.interface INFO:
stderr 2021-04-01T10:58:27.468881:tck2connectome: [WARNING] 359
210401-10:58:27,469 nipype.interface INFO:
stderr 2021-04-01T10:58:27.468881:tck2connectome: [WARNING] (This may indicate poor parcellation image preparation, use of incorrect or incomplete LUT file(s) in labelconvert, or very poor registration)

Just so I can try to help a bit more, I presume that since tck2connectome is being called, this is QSIRecon, yes? It would be good to know a bit about your data, how you preprocessed it, and what recon spec you used for reconstruction.

Best,
Steven

Hi. Yes. It is reported when I run QSIRecon. The data is come from HBN project. Here is its website. You can download some data directly. http://fcon_1000.projects.nitrc.org/indi/cmi_healthy_brain_network/sharing_neuro.html.

Thank you for your help.

As it turns out I have worked with HBN before and have not encountered this error, so could you maybe attach your code you used to run qsiprep and qsirecon, along with the software version?

Yes. I will attach for you. But there may be some late. Since I am not at the lab right now. Thank you very much.

@Jinboasltw which atlas are you using? It’s also possible that a region got resampled outside of the brain or wasn’t big enough to be assigned to a voxel.

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