Summary of what happened:
Hi everyone,
I want to replicate a paper result using fmeiprep. The paper shows that ‘raw images were first put through an automated quality control procedure (fMRIPrep 21.0.1; RRID:SCR_016216), which is based on Nipype 1.6.1 (RRID:SCR_002502).’ More specifically, it shows ‘Brain tissue segmentation of cerebrospinal fluid (CSF), white-matter (WM) and gray-matter (GM) was performed on the brain-extracted T1w using fast10 (FSL 6.0.3:b862cdd5, RRID:SCR_002823). Brain surfaces were reconstructed using recon-all11 (FreeSurfer 6.0.0, RRID:SCR_001847).’
When I tried to preprocessing the data with fmriprep 21.01, the report shows that it uses Freesurfer 6.0.1 and FSL 6.0.5, which is different from the paper. I want to know how to understand this?
Moreover, which version of fmriprep uses the Freesurfer 6.0.0 , FSL 6.0.3 and ANTS 2.3.3? How to see the freesurfer version of fmriprep.simg using singularity?
Command used (and if a helper script was used, a link to the helper script or the command generated):
PASTE CODE HERE
Version:
Environment (Docker, Singularity / Apptainer, custom installation):
Data formatted according to a validatable standard? Please provide the output of the validator:
PASTE VALIDATOR OUTPUT HERE
Relevant log outputs (up to 20 lines):
PASTE LOG OUTPUT HERE