Reconstruction workflow outputs

1

Hello,

I was wondering where I can find more information about the files in qsirecon/sub-*/dwi. For example, I used the mrtrix_singleshell_ss3t spec and I see many files in that output. Looking at the corresponding JSON in Github, I’m having a hard time identifying which mrtrix commands are being used to track down what each output means.

Thanks!

Gustavo

2

You can check the mrtrix_singleshell_ss3t pipeline on qsiprep wiki. or you can check the mrtrix3 wiki to see the pipeline detail.

3

Thank you. The qsiprep wiki in Github only has a couple pages. Is there another one I’m missing? The reconstruction workflows in the latest version of the documentation seems incomplete.

4

Maybe you can read their paper?

5

We have more info here. The exact commands are available in the working directory and there should be a description of the workflow in the html output.

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