Hi, I’m currently running fMRIPrep using the following command
sudo docker run -ti --rm
poldracklab/fmriprep:20.0.2 /data /out/out participant\
–dummy-scans 3 --ignore slicetiming fieldmaps --medial-surface-nan --write-graph
It seems to be running just find when I look at the logs of the docker container. However, I find that there’s no output being written to my desktop. This seems to be the case even when I use the fmriprep-docker wrapper I was wondering if anybody had any insight why that is, or if I’m only supposed to see the files once the process is complete. Thank you for your time!