Dear all,
I have a question related to this as I cant get fmriprep-docker to run.
I work on Macos (mojava v.10.14.3) and I installed docker 2.0.0.3 and phyton 3.7 anaconda. I installed Freesurfer and got the license.
I ran: $pip install --user --upgrade fmriprep-docker
Collecting fmriprep-docker
_ Using cached https://files.pythonhosted.org/packages/d8/12/cecf492beb126774e0992944254533e34d720ea529716765510b757f2d51/fmriprep-docker-1.3.2.tar.gz_
Building wheels for collected packages: fmriprep-docker
_ Running setup.py bdist_wheel for fmriprep-docker … done_
_ Stored in directory: /Users/marloulasschuijt/Library/Caches/pip/wheels/e8/9a/6f/c78e0d9fc1ad4b9bea47071abe5dc8e6fa69aea38bd8d2956c_
Successfully built fmriprep-docker
Installing collected packages: fmriprep-docker
_ The script fmriprep-docker is installed in ‘/Users/marloulasschuijt/.local/bin’ which is not on PATH._
_ Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location._
Successfully installed fmriprep-docker-1.3.2
However when I run fmriprep-docker I keep getting the error “command not found”.
I changed the directory to the path’/Users/marloulasschuijt/.local/bin’ but still was not able to find fmri-prep docker. when I searcher for the programfiles manually I clicked on the program file and than this appeard:
iMac-van-Job:~ marloulasschuijt$ /Users/marloulasschuijt/.local/bin/fmriprep-docker ; exit;
Cannot connect to the Docker daemon at unix:///var/run/docker.sock. Is the docker daemon running?
Downloading. This may take a while…
docker: Cannot connect to the Docker daemon at unix:///var/run/docker.sock. Is the docker daemon running?.
See ‘docker run --help’.
Could not detect memory capacity of Docker container.
Do you have permission to run docker?
logout
Saving session…
…copying shared history…
…saving history…truncating history files…
…completed.
Deleting expired sessions…none found.
I am pretty new to all this, hope someone can help me out!
Best,
Marlou