Running fMRIprep in OpenNeuro

fmriprep

#1

Hi NeuroStars!

Is it possible to run fMRIprep without slice timing correction in OpenNeuro?

I saw the command line option ‘–ignore slicetiming’ in the workflows documentation, but I wasn’t sure If/where I might be able to use this in OpenNeuro. Is this only an option when using something like Docker?

Thanks,
Kim


#2

I just enabled this option - please try it out and let us know if you experience any issues.


#3

thanks Chris! I just started the new analysis, I’ll let you know how it goes.


#4

happy to report that it completed for the single subject I ran. Thanks again!