Hi, Im new to docker and new to MRIQC.
I would like to use MRIQC on data that we are currently collecting and I have two main questions about efficient and proper uses of this BIDS app:
I encountered errors when using the docker commands on the MRIQC documentation website that run the Poldrack lab MRIQC image/container (apologies for my unfamiliarity with correct lingo here). But the docker commands provided on GitHub that run the BIDS-App version from the BIDS/mriqc container work well. How can I identify the version I am using from the BIDS-App version, and how do I ensure that this same version is used for MRIQC on the remaining participants in my study?
My study collects multiple fMRI scans across a period of time. If I chose to run MRIQC on the data from session 1 before collecting the remaining sessions, is there a way for MRIQC to skip sessions that already have QC metrics written in the specified output directory (when I run MRIQC on subsequent sessions)? Currently, it reruns all sessions in the subject’s BIDS directory.