I’m trying to transform the aparcaseg in T1w space (bold resolution) to MNI space with this command:
antsApplyTransforms -d 3 --float 1 -i sub-01_task-stroop_space-T1w_desc-aparcaseg_dseg.nii.gz -o aparc-bold-to-MNI.nii.gz -r MNI152_T1_1mm.nii.gz -t sub-01_from-T1w_to-MNI152NLin6Asym_mode-image_xfm.h5 -n MultiLabel
However the output is not exactly the same as the file sub-01_task-stroop_space-MNI152NLin6Asym_desc-aparcaseg_dseg.nii.gz that fmriprep saves in the func folder.
Could someone please clarify what steps are missing in my command?