the current config documentation for fmriprep 20.2.3 does not indicate if hash_method
can be adjusted. is it possible to create a config file with just this and pass it to an fmriprep singularity container ?
[nipype]
hash_method=content
the current config documentation for fmriprep 20.2.3 does not indicate if hash_method
can be adjusted. is it possible to create a config file with just this and pass it to an fmriprep singularity container ?
[nipype]
hash_method=content
fMRIPrep should respect a nipype config found in $PWD/nipype.cfg
or ~/.nipype/nipype.cfg
(the usual nipype rules). The following are overridden by fMRIPrep’s config:
crashfile_format
resource_monitor
stop_on_first_crash
thanks so much, this is very helpful.
i can’t find nipype.cfg – would this be inside the fmriprep docker container that i am using? and can i change it permanently if it is in there?
thank you so much for your help in advance!
this can be done by adding a nipype.cfg
to the directory where the singularity container is launched containing:
[execution]
hash_method = content
do note the fields of this should correspond to nipype’s configuration as discussed here: basic_execution_configuration
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