Spinal Cord Toolbox (SCT) - New release v6.0

Announcements
1

Dear neuroimaging community,

We are happy to announce the release of SCT v6.0.

This major release provides significant improvements for how SCT is installed on all platforms, as well as many new features and bugfixes.

The most notable changes for this release include:

  • Installation: Allow install_sct to be run standalone (without downloading “Source code” archive). View pull request
  • Installation: Use Miniconda instead of built-in Python for Windows installations. View pull request
  • Feature: Add new CLI script to compute normalized metric ratios (MSCC, etc.) for compressed levels. View pull request
  • Feature: Add new -histo option to sct_warp_template to warp the newly-added PAM50 histology files. View pull request
  • Feature: Add new sagittal mosaic option for sct_deepseg_lesion QC report. View pull request
  • Feature: Add support for model ensembles to sct_deepseg and use it for mp2rage_lesion model. View pull request
  • Feature: Add new -project-centerline option to sct_label_utils to project an image on the spinal cord centerline. View pull request
  • Feature: Add new -centerline-soft option to sct_get_centerline to output a non-binary “soft” centerline. View pull request
  • Bugfix: Ensure that qform/sform codes are preserved when generating sct_deepseg_sc segmentation. View pull request

For the full list of changes included in this release, click here.

For installation instructions, click here.

If you have any questions or feature requests, please post in the SCT forum.

Happy processing!

The Spinal Cord Toolbox Team

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