Hi
I do have 1 question about STC and HMC processing order.
Now I know that fMRIprep preform STC before HMC.
It removes non-steady-state volume using AFNI’s 3dTshift.
Let’s say I have 103 volumes total.
If I use --dummy-scan 3, I use 100 volumes during STC right?
when I preform HMC, which images I used to estimate BOLD reference image?
Removed 3 volumes by AFNI’s 3dTshift? or other images in 100 volumes?
It would really appreciated to have clear answers.
Thanks
Junyong Oh.