Summary of what happened:
Hello
I am doing a study on Parkinson’s disease and would like to use a study specific template for my fMRI preprocessing.
I have created these template files and located them in templateflow/tpl-SST/
In my json file I have written:
{
"Identifier": "SST",
"Name": "Study-specific T1-weighted template",
"BIDSVersion": "1.8.0",
"TemplateFlowVersion": "1.0.0",
"Species": "Homo sapiens",
"License": "CC-BY-4.0",
"Authors": [
"Weijian Liu",
"Birgitte Thomsen"
],
"res": {
"01": {
"zooms": [0.9, 0.9, 0.9],
"units": "mm"
},
"02": {
"zooms": [2.0, 2.0, 2.0],
"units": "mm"
}
}
}
I have written this in my sbatch script:
--output-spaces SST:res-01 \
However, it is not working. It runs for more than a day and then runs out of memory.
Does anyone know how to fix it?
Thank you in advance.
Command used (and if a helper script was used, a link to the helper script or the command generated):
PASTE CODE HERE
Version:
I am using fMRI Prep 22.0.2
Environment (Docker, Singularity / Apptainer, custom installation):
Data formatted according to a validatable standard? Please provide the output of the validator:
PASTE VALIDATOR OUTPUT HERE
Relevant log outputs (up to 20 lines):
PASTE LOG OUTPUT HERE