Tedana install issue

Software Support
1

Hi all
I’m trying to install tedana with these:

conda create -n ENVIRONMENT_NAME python=3 pip mdp numpy scikit-learn scipy
conda activate ENVIRONMENT_NAME
pip install nilearn nibabel
pip install tedana

but i don’t have tedana and have this error:

Defaulting to user installation because normal site-packages is not writeable
WARNING: Skipping /opt/fsl/lib/python3.11/site-packages/nlopt-2.7.1.dist-info due to invalid metadata entry 'name'

what should I do

thanks
pat

2

Hi @mozbet and welcome to neurostars!

Can you confirm that the conda installation and environment are your own personal ones, and not shared (e.g., in a cluster)? It looks like it may be using the FSL installation conda environment.

Best,
Steven

1 Like
3

Hi Steven,

Indeed, I think the problem was the FSL installation which is on a server. I re-installed FSL in my own environment and it seems it’s working correctly.

thanks a lot

patrick

1 Like